Index

A

acceptance (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property) adaptation_duration (epsie.proposals.base.BaseAdaptiveSupport property) AdaptiveAngular (class in epsie.proposals.angular) AdaptiveBoundedDiscrete (class in epsie.proposals.discrete) AdaptiveBoundedEigenvector (class in epsie.proposals.bounded_eigenvector) AdaptiveBoundedNormal (class in epsie.proposals.bounded_normal) AdaptiveEigenvector (class in epsie.proposals.eigenvector)

AdaptiveEigenvectorSupport (class in epsie.proposals.eigenvector) AdaptiveIsotropicSolidAngle (class in epsie.proposals.solid_angle) AdaptiveIsotropicSolidAngleSupport (class in epsie.proposals.solid_angle) AdaptiveNormal (class in epsie.proposals.normal) AdaptiveNormalDiscrete (class in epsie.proposals.discrete) AdaptiveSupport (class in epsie.proposals.normal) Angular (class in epsie.proposals.angular) array2dict() (in module epsie) asdict() (epsie.chain.chaindata.ChainData method) ATAdaptiveAngular (class in epsie.proposals.angular) ATAdaptiveBoundedNormal (class in epsie.proposals.bounded_normal) ATAdaptiveNormal (class in epsie.proposals.normal) ATAdaptiveSupport (class in epsie.proposals.normal)

B

BaseAdaptiveSupport (class in epsie.proposals.base) BaseBirth (class in epsie.proposals.base) BaseChain (class in epsie.chain.base) BaseProposal (class in epsie.proposals.base) BaseRandom (class in epsie.proposals.base) BaseSampler (class in epsie.samplers.base) betas (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.ptsampler.ParallelTemperedSampler property) birth (epsie.proposals.base.BaseBirth property) (epsie.proposals.birth.LogNormalBirth property) (epsie.proposals.birth.NormalBirth property) (epsie.proposals.birth.UniformBirth property) bit_generator (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.proposals.base.BaseRandom attribute) (epsie.proposals.base.BaseRandom property) (epsie.proposals.eigenvector.Eigenvector property)

blob0 (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) blobs (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property) Boundaries (class in epsie.proposals.bounded_normal) boundaries (epsie.proposals.birth.UniformBirth property) (epsie.proposals.bounded_eigenvector.BoundedEigenvector property) (epsie.proposals.bounded_normal.BoundedNormal property) BoundedDiscrete (class in epsie.proposals.discrete) BoundedEigenvector (class in epsie.proposals.bounded_eigenvector) BoundedNormal (class in epsie.proposals.bounded_normal)

C

Chain (class in epsie.chain.chain) chain_id (epsie.chain.base.BaseChain attribute), [1] (epsie.chain.chain.Chain attribute) (epsie.chain.ptchain.ParallelTemperedChain attribute) ChainData (class in epsie.chain.chaindata) chains (epsie.samplers.base.BaseSampler property) checkpoint() (epsie.samplers.base.BaseSampler method) clear() (epsie.chain.base.BaseChain method) (epsie.chain.chain.Chain method) (epsie.chain.chaindata.ChainData method) (epsie.chain.ptchain.ParallelTemperedChain method) (epsie.samplers.base.BaseSampler method) cov (epsie.proposals.eigenvector.Eigenvector property) (epsie.proposals.normal.Normal attribute) (epsie.proposals.normal.Normal property) create_bit_generator() (in module epsie) create_bit_generators() (in module epsie) create_chains() (epsie.samplers.mhsampler.MetropolisHastingsSampler method) (epsie.samplers.ptsampler.ParallelTemperedSampler method) create_seed() (in module epsie)

current_blob (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) current_blobs (epsie.samplers.base.BaseSampler property) current_position (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) current_positions (epsie.samplers.base.BaseSampler property) current_stats (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property)

D

data (epsie.chain.chaindata.ChainData attribute) (epsie.chain.chaindata.ChainData property) deltas (epsie.proposals.normal.AdaptiveSupport property) detect_dtypes() (in module epsie.chain.chaindata)

dtypes (epsie.chain.chaindata.ChainData attribute) (epsie.chain.chaindata.ChainData property) dump_pickle_to_hdf() (in module epsie) dump_state() (in module epsie) DynamicalAnnealer (class in epsie.chain.ptchain)

E

Eigenvector (class in epsie.proposals.eigenvector) eigvals (epsie.proposals.eigenvector.Eigenvector property) eigvects (epsie.proposals.eigenvector.Eigenvector property) epsie module epsie.chain module epsie.chain.base module epsie.chain.chain module epsie.chain.chaindata module epsie.chain.ptchain module epsie.proposals module epsie.proposals.angular module epsie.proposals.base module epsie.proposals.birth module epsie.proposals.bounded_eigenvector module

epsie.proposals.bounded_normal module epsie.proposals.discrete module epsie.proposals.eigenvector module epsie.proposals.joint module epsie.proposals.nested_transdimensional module epsie.proposals.normal module epsie.proposals.solid_angle module epsie.samplers module epsie.samplers.base module epsie.samplers.mhsampler module epsie.samplers.ptsampler module extend() (epsie.chain.chaindata.ChainData method)

H

hasblobs (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property)

hyperplanes (epsie.proposals.bounded_eigenvector.BoundedEigenvector property)

I

isdegs (epsie.proposals.solid_angle.IsotropicSolidAngle property) isdiagonal (epsie.proposals.normal.Normal property) IsotropicSolidAngle (class in epsie.proposals.solid_angle) isradec (epsie.proposals.solid_angle.IsotropicSolidAngle property) iteration (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property)

J

JointProposal (class in epsie.proposals.joint) jump() (epsie.proposals.base.BaseProposal method)

jump_interval (epsie.proposals.base.BaseProposal property) jump_interval_duration (epsie.proposals.base.BaseProposal property)

K

kappa (epsie.proposals.solid_angle.IsotropicSolidAngle property)

L

lastclear (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property)

load_state() (in module epsie) LogNormalBirth (class in epsie.proposals.birth) logpdf() (epsie.proposals.base.BaseBirth method) (epsie.proposals.base.BaseProposal method) (epsie.proposals.birth.LogNormalBirth method) (epsie.proposals.birth.NormalBirth method) (epsie.proposals.birth.UniformBirth method) lower (epsie.proposals.bounded_normal.Boundaries property)

M

make_betas_ladder() (in module epsie) max_std (epsie.proposals.normal.SSAdaptiveSupport attribute) MetropolisHastingsSampler (class in epsie.samplers.mhsampler) model (epsie.samplers.base.BaseSampler property) model_proposal (epsie.proposals.nested_transdimensional.NestedTransdimensional attribute) (epsie.proposals.nested_transdimensional.NestedTransdimensional property) module epsie epsie.chain epsie.chain.base epsie.chain.chain epsie.chain.chaindata epsie.chain.ptchain epsie.proposals epsie.proposals.angular epsie.proposals.base epsie.proposals.birth epsie.proposals.bounded_eigenvector epsie.proposals.bounded_normal epsie.proposals.discrete epsie.proposals.eigenvector epsie.proposals.joint epsie.proposals.nested_transdimensional epsie.proposals.normal epsie.proposals.solid_angle epsie.samplers epsie.samplers.base epsie.samplers.mhsampler epsie.samplers.ptsampler

mu (epsie.proposals.birth.LogNormalBirth property) (epsie.proposals.birth.NormalBirth property)

N

n_accepted (epsie.proposals.normal.SSAdaptiveSupport attribute) name (epsie.proposals.angular.AdaptiveAngular attribute) (epsie.proposals.angular.Angular attribute) (epsie.proposals.angular.ATAdaptiveAngular attribute) (epsie.proposals.angular.SSAdaptiveAngular attribute) (epsie.proposals.base.BaseBirth attribute) (epsie.proposals.base.BaseProposal attribute) (epsie.proposals.base.BaseRandom attribute) (epsie.proposals.birth.LogNormalBirth attribute) (epsie.proposals.birth.NormalBirth attribute) (epsie.proposals.birth.UniformBirth attribute) (epsie.proposals.bounded_eigenvector.AdaptiveBoundedEigenvector attribute) (epsie.proposals.bounded_eigenvector.BoundedEigenvector attribute) (epsie.proposals.bounded_normal.AdaptiveBoundedNormal attribute) (epsie.proposals.bounded_normal.ATAdaptiveBoundedNormal attribute) (epsie.proposals.bounded_normal.BoundedNormal attribute) (epsie.proposals.bounded_normal.SSAdaptiveBoundedNormal attribute) (epsie.proposals.discrete.AdaptiveBoundedDiscrete attribute) (epsie.proposals.discrete.AdaptiveNormalDiscrete attribute) (epsie.proposals.discrete.BoundedDiscrete attribute) (epsie.proposals.discrete.NormalDiscrete attribute) (epsie.proposals.discrete.SSAdaptiveBoundedDiscrete attribute) (epsie.proposals.discrete.SSAdaptiveNormalDiscrete attribute) (epsie.proposals.eigenvector.AdaptiveEigenvector attribute) (epsie.proposals.eigenvector.Eigenvector attribute) (epsie.proposals.joint.JointProposal attribute) (epsie.proposals.nested_transdimensional.NestedTransdimensional attribute) (epsie.proposals.normal.AdaptiveNormal attribute) (epsie.proposals.normal.ATAdaptiveNormal attribute) (epsie.proposals.normal.Normal attribute) (epsie.proposals.normal.SSAdaptiveNormal attribute) (epsie.proposals.solid_angle.AdaptiveIsotropicSolidAngle attribute) (epsie.proposals.solid_angle.IsotropicSolidAngle attribute)

nchains (epsie.samplers.base.BaseSampler property) NestedTransdimensional (class in epsie.proposals.nested_transdimensional) niterations (epsie.samplers.base.BaseSampler property) norm (epsie.proposals.solid_angle.IsotropicSolidAngle property) Normal (class in epsie.proposals.normal) NormalBirth (class in epsie.proposals.birth) NormalDiscrete (class in epsie.proposals.discrete) nsteps (epsie.proposals.base.BaseProposal attribute) (epsie.proposals.base.BaseProposal property) ntemps (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.ptsampler.ParallelTemperedSampler property)

P

ParallelTemperedChain (class in epsie.chain.ptchain) ParallelTemperedSampler (class in epsie.samplers.ptsampler) parameters (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chaindata.ChainData attribute) (epsie.proposals.base.BaseRandom attribute) (epsie.proposals.base.BaseRandom property) (epsie.samplers.base.BaseSampler property) pdf() (epsie.proposals.base.BaseBirth method) (epsie.proposals.base.BaseProposal method) pool (epsie.samplers.base.BaseSampler property) positions (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property)

prior_widths (epsie.proposals.normal.AdaptiveSupport property) proposal_dist (epsie.chain.chain.Chain attribute) proposals (epsie.proposals.joint.JointProposal attribute) (epsie.proposals.nested_transdimensional.NestedTransdimensional attribute) (epsie.proposals.nested_transdimensional.NestedTransdimensional property) (epsie.samplers.base.BaseSampler property) proposed_position (epsie.chain.chain.Chain property)

R

random_generator (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.proposals.base.BaseRandom attribute) (epsie.proposals.base.BaseRandom property) random_state (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.proposals.base.BaseRandom attribute) (epsie.proposals.base.BaseRandom property)

recursive_covariance() (epsie.proposals.eigenvector.AdaptiveEigenvectorSupport method) run() (epsie.samplers.base.BaseSampler method)

S

scratchlen (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) seed (epsie.samplers.base.BaseSampler property) set_jump_interval() (epsie.proposals.base.BaseProposal method) set_len() (epsie.chain.chaindata.ChainData method) set_proposals() (epsie.samplers.base.BaseSampler method) set_state() (epsie.chain.base.BaseChain method) (epsie.chain.chain.Chain method) (epsie.chain.ptchain.ParallelTemperedChain method) (epsie.proposals.base.BaseRandom method) (epsie.proposals.birth.LogNormalBirth method) (epsie.proposals.birth.NormalBirth method) (epsie.proposals.birth.UniformBirth method) (epsie.proposals.eigenvector.AdaptiveEigenvectorSupport method) (epsie.proposals.eigenvector.Eigenvector method) (epsie.proposals.joint.JointProposal method) (epsie.proposals.nested_transdimensional.NestedTransdimensional method) (epsie.proposals.normal.AdaptiveSupport method) (epsie.proposals.normal.ATAdaptiveSupport method) (epsie.proposals.normal.Normal method) (epsie.proposals.normal.SSAdaptiveSupport method) (epsie.proposals.solid_angle.AdaptiveIsotropicSolidAngleSupport method) (epsie.proposals.solid_angle.IsotropicSolidAngle method) (epsie.samplers.base.BaseSampler method) set_state_from_checkpoint() (epsie.samplers.base.BaseSampler method) setup_adaptation() (epsie.proposals.eigenvector.AdaptiveEigenvectorSupport method) (epsie.proposals.normal.AdaptiveSupport method) (epsie.proposals.normal.ATAdaptiveSupport method) (epsie.proposals.normal.SSAdaptiveSupport method) (epsie.proposals.solid_angle.AdaptiveIsotropicSolidAngleSupport method) setup_annealing() (epsie.chain.ptchain.DynamicalAnnealer method) setup_births() (epsie.proposals.nested_transdimensional.NestedTransdimensional method) setup_decay() (epsie.chain.ptchain.DynamicalAnnealer method) setup_mu_std() (epsie.proposals.birth.LogNormalBirth method) (epsie.proposals.birth.NormalBirth method) setup_proposals() (epsie.proposals.nested_transdimensional.NestedTransdimensional method) shuffle_rate (epsie.proposals.eigenvector.Eigenvector property) SSAdaptiveAngular (class in epsie.proposals.angular) SSAdaptiveBoundedDiscrete (class in epsie.proposals.discrete) SSAdaptiveBoundedNormal (class in epsie.proposals.bounded_normal) SSAdaptiveNormal (class in epsie.proposals.normal) SSAdaptiveNormalDiscrete (class in epsie.proposals.discrete) SSAdaptiveSupport (class in epsie.proposals.normal) start_position (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property) start_step (epsie.proposals.base.BaseAdaptiveSupport property) state (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.proposals.base.BaseBirth attribute) (epsie.proposals.base.BaseProposal attribute) (epsie.proposals.base.BaseRandom attribute) (epsie.proposals.base.BaseRandom property) (epsie.proposals.birth.LogNormalBirth property) (epsie.proposals.birth.NormalBirth property) (epsie.proposals.birth.UniformBirth property) (epsie.proposals.eigenvector.AdaptiveEigenvectorSupport property) (epsie.proposals.eigenvector.Eigenvector property) (epsie.proposals.joint.JointProposal property) (epsie.proposals.nested_transdimensional.NestedTransdimensional property) (epsie.proposals.normal.AdaptiveSupport property) (epsie.proposals.normal.ATAdaptiveSupport property) (epsie.proposals.normal.Normal property) (epsie.proposals.normal.SSAdaptiveSupport property) (epsie.proposals.solid_angle.AdaptiveIsotropicSolidAngleSupport property) (epsie.proposals.solid_angle.IsotropicSolidAngle property) (epsie.samplers.base.BaseSampler property)

stats (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.base.BaseSampler property) stats0 (epsie.chain.base.BaseChain attribute) (epsie.chain.base.BaseChain property) (epsie.chain.chain.Chain attribute) (epsie.chain.chain.Chain property) (epsie.chain.ptchain.ParallelTemperedChain attribute) (epsie.chain.ptchain.ParallelTemperedChain property) std (epsie.proposals.birth.LogNormalBirth property) (epsie.proposals.birth.NormalBirth property) (epsie.proposals.normal.Normal property) step() (epsie.chain.base.BaseChain method) (epsie.chain.chain.Chain method) (epsie.chain.ptchain.ParallelTemperedChain method) successive (epsie.proposals.discrete.BoundedDiscrete property) (epsie.proposals.discrete.NormalDiscrete property) swap_interval (epsie.samplers.ptsampler.ParallelTemperedSampler property) swap_temperatures() (epsie.chain.ptchain.ParallelTemperedChain method) symmetric (epsie.proposals.angular.AdaptiveAngular attribute) (epsie.proposals.angular.Angular attribute) (epsie.proposals.angular.ATAdaptiveAngular attribute) (epsie.proposals.angular.SSAdaptiveAngular attribute) (epsie.proposals.base.BaseBirth attribute) (epsie.proposals.base.BaseProposal attribute) (epsie.proposals.base.BaseProposal property) (epsie.proposals.bounded_eigenvector.AdaptiveBoundedEigenvector attribute) (epsie.proposals.bounded_eigenvector.BoundedEigenvector attribute) (epsie.proposals.bounded_normal.AdaptiveBoundedNormal attribute) (epsie.proposals.bounded_normal.ATAdaptiveBoundedNormal attribute) (epsie.proposals.bounded_normal.BoundedNormal attribute) (epsie.proposals.bounded_normal.SSAdaptiveBoundedNormal attribute) (epsie.proposals.discrete.AdaptiveBoundedDiscrete attribute) (epsie.proposals.discrete.AdaptiveNormalDiscrete attribute) (epsie.proposals.discrete.BoundedDiscrete attribute) (epsie.proposals.discrete.NormalDiscrete attribute) (epsie.proposals.discrete.SSAdaptiveBoundedDiscrete attribute) (epsie.proposals.discrete.SSAdaptiveNormalDiscrete attribute) (epsie.proposals.eigenvector.AdaptiveEigenvector attribute) (epsie.proposals.eigenvector.Eigenvector attribute) (epsie.proposals.joint.JointProposal property) (epsie.proposals.nested_transdimensional.NestedTransdimensional property) (epsie.proposals.normal.AdaptiveNormal attribute) (epsie.proposals.normal.ATAdaptiveNormal attribute) (epsie.proposals.normal.Normal attribute) (epsie.proposals.normal.SSAdaptiveNormal attribute) (epsie.proposals.solid_angle.AdaptiveIsotropicSolidAngle attribute) (epsie.proposals.solid_angle.IsotropicSolidAngle attribute)

T

target_rate (epsie.proposals.base.BaseAdaptiveSupport property) temperature_acceptance (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.ptsampler.ParallelTemperedSampler property) temperature_swaps (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.ptsampler.ParallelTemperedSampler property)

temperatures (epsie.chain.ptchain.ParallelTemperedChain property) (epsie.samplers.ptsampler.ParallelTemperedSampler property) transdimensional (epsie.chain.chain.Chain attribute) (epsie.proposals.nested_transdimensional.NestedTransdimensional attribute)

U

UniformBirth (class in epsie.proposals.birth) update() (epsie.proposals.base.BaseBirth method) (epsie.proposals.base.BaseProposal method)

upper (epsie.proposals.bounded_normal.Boundaries property)